PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G308900.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 250aa    MW: 25937 Da    PI: 8.3904
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G308900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2621.3e-19106156155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           s y+GVr+++ +g+W+AeIrdp+    r  r +lg+f+tae+Aa+a++ a+ +++g
  Sobic.004G308900.1.p 106 SSYRGVRRRP-WGKWAAEIRDPR----RaVRKWLGTFDTAEDAARAYDVAAVEFRG 156
                           67********.**********82....48***********************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.0E-12106156IPR001471AP2/ERF domain
SuperFamilySSF541715.56E-23106165IPR016177DNA-binding domain
PROSITE profilePS5103225.554107164IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-31107165IPR001471AP2/ERF domain
SMARTSM003805.6E-36107170IPR001471AP2/ERF domain
CDDcd000188.39E-29108163No hitNo description
PRINTSPR003673.7E-11108119IPR001471AP2/ERF domain
PRINTSPR003673.7E-11130146IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MAPRLERGGF QLPNTEQENS LFLGALISVV SGDAAAPAAL LPAPAPASAA CARCGVDGCH  60
GSGCELVAGS SSDSDGAECS AASASRASVG GGGGVGKRRG RGRRVSSYRG VRRRPWGKWA  120
AEIRDPRRAV RKWLGTFDTA EDAARAYDVA AVEFRGQRAK LNFPADAAAV AAPALAPSWA  180
GAAVQPHHRP LPDHQSLREN CGSNAASPVH VAQAPTTQQG IRTVAKEQDI WDGLNEIVMM  240
DDGSFWSMP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-20108164663ATERF1
3gcc_A5e-20108164663ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196113KRRGRGRRVSSYRGVRRR
297114RRGRGRRVSSYRGVRRRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9749751e-125EU974975.1 Zea mays clone 461977 ethylene-responsive element binding protein 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001241699.11e-100ethylene-responsive element binding protein 2
TrEMBLB6UCL01e-99B6UCL0_MAIZE; Ethylene-responsive element binding protein 2
STRINGGRMZM2G103085_P013e-99(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124236124
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.12e-14ERF family protein